Ciao, non so che kernel usi però leggendo nel thread ufficiale del kernel apolo è scritto di aggiornare supersu sempre in modalità normale e non cwm/twrp altrimenti si rischia il bootloop. In questo caso lui consiglia questa soluzione per risolvere il problema:
1) Try to enter to recovery. Press vol up, Home button and Power button at the same time until the device enters into recovery (system can restart 2 or 3 times, but don't release buttons). Then wipe cache and dalvik and reboot.
2a) if 1) didn't work, enter into download mode and flash light TWRP version if you had CWM. Wipe cache and Dalvik and reinstall CWM if you wish.
2b) if TWRP didn't work or you had TWRP version already, flash last PhilZ kernel (thx to Phil3759), enter into Philz recovery and wipe cache and Dalvik. Then reinstall Apolo.
3) if nothing worked, try to reinstall your ROM without wipe data and wipe cache and Dalvik
4) wipe data (you will loose all your application and configurations)
5) reinstall with odin stock ROM WITH repartition (pit file). Then install Apolo and reinstall your custom ROM.
Spero ti possa essere d'aiuto, ciao!